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Top Topics Research Front Map - April 2009

As part of this bimonthly processing, ScienceWatch.com selects the Research Fronts with the largest absolute increase in size in each of the 22 major fields covered by Essential Science IndicatorsSM from Thomson Reuters. The size of a research front is determined by the number of core papers it contains. This Research Front on DNA AND RNA SEQUENCING from the field of Molecular Biology & Genetics was selected for mapping from the list of Top Topics for April 2009 (data from the sixth bimonthly period of 2008). The map is a diagrammatic representation of the 20 core papers comprising the front in Molecular Biology & Genetics.

This map also appears under Fast Moving Fronts in Computer Science for the same time period.

Each circle represents a highly cited paper whose bibliographic information is displayed when the user clicks on the circle. The lines between circles represent the strongest co-citation links for each paper (that is, indicating that the papers are frequently cited together). Papers close to each other on the map are generally more highly co-cited. The most recent paper(s) are indicated in pink. Annotations may have been added to this map which represent the main research themes. These appear as labels attached to specific regions on the maps. Weber-2005 Jones-2005 Okoniewski-2006 Eckhardt-2006 Warren-2007 Weber-2007 Jeck-2007 Torres-2008 Wold-2008 Casneuf-2007 Li-2008 Cokus-2008 Smith-2008 Vera-2008 Lister-2008 Illingworth-2008 Nagalakshmi-2008 Wilhelm-2008 Cloonan-2008 Mortazavi-2008

DNA AND RNA SEQUENCING


 Core Papers 


Label: Weber-2005
Dirk Schübeler on Dna and Rna Sequencing - Podcast: MP3 ¦ WMA
Title: Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

Journal: NAT GENET, 37 (8): 853-862 AUG 2005
Citations: 175
Authors: Weber, M;Davies, JJ;Wittig, D;Oakeley, EJ;Haase, M;Lam, WL;Schubeler, D
Addresses:
Friedrich Miescher Inst Biomed Res, Maulbeerstr 66, CH-4058 Basel, Switzerland
Friedrich Miescher Inst Biomed Res, CH-4058 Basel, Switzerland
British Columbia Canc Res Ctr, Vancouver, BC V5Z 1L3, Canada
Dresden Univ Technol, Dept Pathol, D-8027 Dresden, Germany


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Label: Eckhardt-2006
Title: DNA methylation profiling of human chromosomes 6, 20 and 22
Journal: NAT GENET, 38 (12): 1378-1385 DEC 2006
Citations: 97
Authors: Eckhardt, F;Lewin, J;Cortese, R;Rakyan, VK;Attwood, J;Burger, M;Burton, J;Cox, TV;Davies, R;Down, TA;Haefliger, C;Horton, R;Howe, K;Jackson, DK;Kunde, J;Koenig, C;Liddle, J;Niblett, D;Otto, T;Pettett, R;Seemann, S;Thompson, C;West, T;Rogers, J;Olek, A;Berlin, K;Beck, S
Addresses:
Epigenom AG, Kleine Prasidentstr 1, D-10178 Berlin, Germany
Epigenom AG, D-10178 Berlin, Germany
Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England


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Label: Weber-2007
Title: Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
Journal: NAT GENET, 39 (4): 457-466 APR 2007
Citations: 91
Authors: Weber, M;Hellmann, I;Stadler, MB;Ramos, L;Paabo, S;Rebhan, M;Schubeler, D
Addresses:
Friedrich Miescher Inst Biomed Res, Maulbeerstr 66, CH-4058 Basel, Switzerland
Friedrich Miescher Inst Biomed Res, CH-4058 Basel, Switzerland
Max Planck Inst Evolutionary Anthropol, D-04103 Leipzig, Germany
Univ Copenhagen, DK-2100 Copenhagen, Denmark
Radboud Univ Nijmegen Med Ctr, Dept Obstet & Gynaecol, NL-6500 HB Nijmegen, Netherlands


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Label: Jones-2005
Title: A blueprint for a human epigenome project: the AACR human epigenome workshop
Journal: CANCER RES, 65 (24): 11241-11246 DEC 15 2005
Citations: 52
Authors: Jones, PA;Martienssen, R
Addresses:
Univ So Calif, Norris Comprehens Canc Ctr, Room NOR 83021,1441 Eastlake Ave, Los Angeles, CA 90089 USA
Univ So Calif, Norris Comprehens Canc Ctr, Los Angeles, CA 90089 USA
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA


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Label: Cokus-2008
Title: Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Journal: NATURE, 452 (7184): 215-219 MAR 13 2008
Citations: 36
Authors: Cokus, SJ;Feng, SH;Zhang, XY;Chen, ZG;Merriman, B;Haudenschild, CD;Pradhan, S;Nelson, SF;Pellegrini, M;Jacobsen, SE
Addresses:
Univ Calif Los Angeles, David Geffen Sch Med, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Univ Calif Los Angeles, David Geffen Sch Med, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Univ Calif Los Angeles, David Geffen Sch Med, Howard Hughes Med Inst, Los Angeles, CA 90095 USA
Univ Calif Los Angeles, David Geffen Sch Med, Dept Human Genet, Los Angeles, CA 90095 USA
Illumina Inc, Hayward, CA 94545 USA
New England Biolabs Inc, Ipswich, MA 01938 USA


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Label: Lister-2008
Title: Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Journal: CELL, 133 (3): 523-536 MAY 2 2008
Citations: 29
Authors: Lister, R;O'Malley, RC;Tonti-Filippini, J;Gregory, BD;Berry, CC;Millar, AH;Ecker, JR
Addresses:
Salk Inst Biol Studies, Plant Biol Lab, 10010 N Torrey Pines Rd, La Jolla, CA 92037 USA
Salk Inst Biol Studies, Plant Biol Lab, La Jolla, CA 92037 USA
Salk Inst Biol Studies, Genom Anal Lab, La Jolla, CA 92037 USA
Univ Calif San Diego, Dept Family Prevent Med, La Jolla, CA 92093 USA
Univ Western Australia, ARC Ctr Excellence Plant Energy Biol, Crawley, WA 6009, Australia


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Label: Nagalakshmi-2008
Title: The transcriptional landscape of the yeast genome defined by RNA sequencing
Journal: SCIENCE, 320 (5881): 1344-1349 JUN 6 2008
Citations: 20
Authors: Nagalakshmi, U;Wang, Z;Waern, K;Shou, C;Raha, D;Gerstein, M;Snyder, M
Addresses:
Yale Univ, Dept Mol Cellular & Dev Biol, New Haven, CT 06520 USA
Yale Univ, Dept Mol Cellular & Dev Biol, New Haven, CT 06520 USA
Yale Univ, Program Comp Sci & Computat Biol, New Haven, CT 06520 USA
Yale Univ, Dept Mol Biophys & Biochem, New Haven, CT 06520 USA


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Label: Wilhelm-2008
Title: Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
Journal: NATURE, 453 (7199): 1239-U39 JUN 26 2008
Citations: 18
Authors: Wilhelm, BT;Marguerat, S;Watt, S;Schubert, F;Wood, V;Goodhead, I;Penkett, CJ;Rogers, J;Bahler, J
Addresses:
UCL, Dept Genet Evolut & Environm, Mortimer St, London WC1E 6BT, England
Wellcome Trust Sanger Inst, Canc Res UK Fiss Yeast Funct Genom Grp, Cambridge CB10 1HH, England


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Label: Mortazavi-2008
Title: Mapping and quantifying mammalian transcriptomes by RNA-Seq
Journal: NAT METHODS, 5 (7): 621-628 JUL 2008
Citations: 17
Authors: Mortazavi, A;Williams, BA;Mccue, K;Schaeffer, L;Wold, B
Addresses:
CALTECH, Div Biol, MC 156-29, Pasadena, CA 91125 USA
CALTECH, Div Biol, Pasadena, CA 91125 USA


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Label: Warren-2007
Title: Assembling millions of short DNA sequences using SSAKE
Journal: BIOINFORMATICS, 23 (4): 500-501 FEB 15 2007
Citations: 16
Authors: Warren, RL;Sutton, GG;Jones, SJM;Holt, RA
Addresses:
British Columbia Canc Agcy, Genome Sci Ctr, 675 W 10th Ave, Vancouver, BC V5Z 1L3, Canada
British Columbia Canc Agcy, Genome Sci Ctr, Vancouver, BC V5Z 1L3, Canada
J Craig Venter Inst, Rockville, MD 20850 USA


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Label: Torres-2008
Title: Gene expression profiling by massively parallel sequencing
Journal: GENOME RES, 18 (1): 172-177 JAN 2008
Citations: 14
Authors: Torres, TT;Metta, M;Ottenwalder, B;Schlotterer, C
Addresses:
Vet Med Univ Wein, Inst Tierzucht & Genet, A-1210 Vienna, Austria
Vet Med Univ Wein, Inst Tierzucht & Genet, A-1210 Vienna, Austria
Eurofins Medigenomix GmbH, D-82152 Martinsried, Germany


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Label: Wold-2008
Title: Sequence census methods for functional genomics
Journal: NAT METHODS, 5 (1): 19-21 JAN 2008
Citations: 14
Authors: Wold, B;Myers, RM
Addresses:
CALTECH, Div Biol, Pasadena, CA 91125 USA
CALTECH, Div Biol, Pasadena, CA 91125 USA
Stanford Univ, Sch Med, Dept Genet, Stanford, CA 94305 USA


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Label: Cloonan-2008
Title: Stem cell transcriptome profiling via massive-scale mRNA sequencing
Journal: NAT METHODS, 5 (7): 613-619 JUL 2008
Citations: 13
Authors: Cloonan, N;Forrest, ARR;Kolle, G;Gardiner, BBA;Faulkner, GJ;Brown, MK;Taylor, DF;Steptoe, AL;Wani, S;Bethel, G;Robertson, AJ;Perkins, AC;Bruce, SJ;Lee, CC;Ranade, SS;Peckham, HE;Manning, JM;McKernan, KJ;Grimmond, SM
Addresses:
Univ Queensland, Inst Mol Biosci, Express Genom Lab, 306 Carmody Rd, St Lucia, Qld 4072, Australia
Univ Queensland, Inst Mol Biosci, Express Genom Lab, St Lucia, Qld 4072, Australia
Appl Biosyst Inc, Beverly, MA 01915 USA


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Label: Okoniewski-2006
Title: Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
Journal: BMC BIOINFORMATICS, 7: art. no.-276 JUN 2 2006
Citations: 13
Authors: Okoniewski, MJ;Miller, CJ
Addresses:
Univ Manchester, Paterson Inst Canc Res, Christie Hosp Site,Wilmslow Rd, Manchester M20 4BX, Lancs, England
Univ Manchester, Paterson Inst Canc Res, Manchester M20 4BX, Lancs, England


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Label: Jeck-2007
Title: Extending assembly of short DNA sequences to handle error
Journal: BIOINFORMATICS, 23 (21): 2942-2944 NOV 1 2007
Citations: 10
Authors: Jeck, WR;Reinhardt, JA;Baltrus, DA;Hickenbotham, MT;Magrini, V;Mardis, ER;Dangl, JL;Jones, CD
Addresses:
Univ N Carolina, Dept Biol, CB 3280, Chapel Hill, NC 27599 USA
Univ N Carolina, Dept Biol, Chapel Hill, NC 27599 USA
Washington Univ, Sch Med, Dept Genet, St Louis, MO 63108 USA
Univ N Carolina, Carolina Ctr Genome Sci, Chapel Hill, NC 27599 USA


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Label: Illingworth-2008
Title: A novel CpG island set identifies tissue-specific methylation at developmental gene loci
Journal: PLOS BIOL, 6 (1): art. no.-e22 JAN 2008
Citations: 9
Authors: Illingworth, R;Kerr, A;DeSousa, D;Jorgensen, H;Ellis, P;Stalker, J;Jackson, D;Clee, C;Plumb, R;Rogers, J;Humphray, S;Cox, T;Langford, C;Bird, A
Addresses:
Univ Edinburgh, WellcomeTrust Ctr Cell Biol, Edinburgh, Midlothian, Scotland
Univ Edinburgh, WellcomeTrust Ctr Cell Biol, Edinburgh, Midlothian, Scotland
Imperial Coll Sch Med, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London, England
Wellcome Trust Sanger Ctr, Cambridge, England


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Label: Li-2008
Title: SOAP: short oligonucleotide alignment program
Journal: BIOINFORMATICS, 24 (5): 713-714 MAR 1 2008
Citations: 8
Authors: Li, RQ;Li, YR;Kristiansen, K;Wang, J
Addresses:
Beijing Genom Inst Shenzhen, Shenzhen 518083, Peoples R China
Beijing Genom Inst Shenzhen, Shenzhen 518083, Peoples R China
Univ So Denmark, Dept Biochem & Mol Biol, DK-5230 Odense, Denmark


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Label: Smith-2008
Title: Using quality scores and longer reads improves accuracy of Solexa read mapping
Journal: BMC BIOINFORMATICS, 9: art. no.-128 FEB 28 2008
Citations: 8
Authors: Smith, AD;Xuan, ZY;Zhang, MQ
Addresses:
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11274 USA
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11274 USA


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Label: Vera-2008
Title: Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
Journal: MOL ECOL, 17 (7): 1636-1647 APR 2008
Citations: 8
Authors: Vera, JC;Wheat, CW;Fescemyer, HW;Frilander, MJ;Crawford, DL;Hanski, I;Marden, JH
Addresses:
Penn State Univ, Mueller Lab 208, Dept Biol, University Pk, PA 16802 USA
Penn State Univ, Mueller Lab 208, Dept Biol, University Pk, PA 16802 USA
Univ Helsinki, Dept Biol & Environm Sci, FIN-00014 Helsinki, Finland
Univ Helsinki, Inst Biotechnol, FIN-00014 Helsinki, Finland
Univ Miami, Rosenstiel Sch Marine & Atmospher Sci, Miami, FL 33149 USA


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Label: Casneuf-2007
Title: In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
Journal: BMC BIOINFORMATICS, 8: art. no.-461 NOV 26 2007
Citations: 5
Authors: Casneuf, T;Van de Peer, Y;Huber, W
Addresses:
EMBL European Bioinformat Inst, Cambridge CB10 1SD, England
EMBL European Bioinformat Inst, Cambridge CB10 1SD, England
VIB, Dept Plant Syst Biol, B-9052 Ghent, Belgium
Univ Ghent, Dept Mol Genet, B-9052 Ghent, Belgium


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KEYWORDS: ARABIDOPSIS GENOME REVEALS DNA METHYLATION PATTERNING; SHORT DNA SEQUENCES USING SSAKE; DNA METHYLATION PROFILING; DIFFERENTIAL DNA METHYLATION; PROMOTER DNA METHYLATION.
[6360: (2002-2008_6) (TT: MOL) (FMF: COM)]



Top Topics : 2009 : Apr. 09 - DNA AND RNA SEQUENCING - Research Front Map