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Top Topics Research Front Map - April 2010

As part of this bimonthly processing, ScienceWatch.com selects the Research Fronts with the largest absolute increase in size in each of the 22 major fields covered by Essential Science IndicatorsSM from Thomson Reuters. The size of a research front is determined by the number of core papers it contains. This Research Front on APPLYING GENOME-WIDE SELECTION from the field of Agricultural Sciences was selected for mapping from the list of Top Topics for April 2010 (data from the sixth bimonthly period of 2009). The map is a diagrammatic representation of the 22 core papers comprising the front in Agricultural Sciences.

Each circle represents a highly cited paper whose bibliographic information is displayed when the user clicks on the circle. The lines between circles represent the strongest co-citation links for each paper (that is, indicating that the papers are frequently cited together). Papers close to each other on the map are generally more highly co-cited. The most recent paper(s) are indicated in pink. Annotations may have been added to this map which represent the main research themes. These appear as labels attached to specific regions on the maps.

 Swanson-Wagner-2006Schaeffer-2006Guo-2006Meyer-2007Yandell-2007Xu-2007Bernardo-2007Goddard-2007Muir-2007Legarra-2008Eathington-2007Guo-2008Xu-2008Park-2008Bernardo-2008VanRaden-2008VanRaden-2009Hayes-2009Heffner-2009Schrag-2009Elsik-2009Gibbs-2009

APPLYING GENOME-WIDE SELECTION

 

 


 Core Papers 


Label: Swanson-Wagner-2006
Title: All possible modes of gene action are observed in a global comparison of gene expression in a maize F-1 hybrid and its inbred parents
Journal: PROC NAT ACAD SCI USA, 103 (18): 6805-6810 MAY 2 2006
Citations: 77
Authors: Swanson-Wagner, RA;Jia, Y;DeCook, R;Borsuk, LA;Nettleton, D;Schnable, PS
Addresses:
Iowa State Univ, Interdept Genet Grad Program, Ames, IA 50011 USA
Iowa State Univ, Interdept Genet Grad Program, Ames, IA 50011 USA
Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA
Iowa State Univ, Dept Stat, Ames, IA 50011 USA
Iowa State Univ, Dept Agron, Ames, IA 50011 USA
Iowa State Univ, Interdept Plant Physiol Grad Program, Ames, IA 50011 USA
Iowa State Univ, Interdept Bioinformat & Computat Biol Grad Progra, Ames, IA 50011 USA
Iowa State Univ, Ctr Plant Genom, Ames, IA 50011 USA


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Label: Schaeffer-2006
Title: Strategy for applying genome-wide selection in dairy cattle
Journal: J ANIM BREED GENET, 123 (4): 218-223 AUG 2006
Citations: 44
Authors: Schaeffer, LR
Addresses:
Univ Guelph, Dept Anim & Poultry Sci, Ctr Genet Improvement Livestock, Guelph, ON N1G 2W1, Canada
Univ Guelph, Dept Anim & Poultry Sci, Ctr Genet Improvement Livestock, Guelph, ON N1G 2W1, Canada


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Label: Guo-2006
Title: Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis
Journal: THEOR APPL GENET, 113 (5): 831-845 SEP 2006
Citations: 43
Authors: Guo, M;Rupe, MA;Yang, XF;Crasta, O;Zinselmeier, C;Smith, OS;Bowen, B
Addresses:
Pioneer HiBred Int Inc, 7250 NW 62nd Ave, Johnston, IA 50131 USA
Pioneer HiBred Int Inc, Johnston, IA 50131 USA
CuraGen Corp, New Haven, CT USA


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Label: Elsik-2009
Title: The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
Journal: SCIENCE, 324 (5926): 522-528 APR 24 2009
Citations: 31
Authors: Elsik, CG;Tellam, RL;Worley, KC;Bovine Genome Sequencing Anal Cons
Addresses:
Georgetown Univ, Dept Biol, 406 Reiss,37th & O St NW, Washington, DC 20057 USA
Georgetown Univ, Dept Biol, Washington, DC 20057 USA
CSIRO Livestock Ind, St Lucia, Qld 4067, Australia
Baylor Coll Med, Dept Mol & Human Genet, Human Genome Sequencing Ctr, Houston, TX 77030 USA


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Label: Meyer-2007
Title: Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern
Journal: PLANT MOL BIOL, 63 (3): 381-391 FEB 2007
Citations: 26
Authors: Meyer, S;Pospisil, H;Scholten, S
Addresses:
Univ Hamburg, Bioctr Klein Flottbek, Ohnhorststr 18, D-22609 Hamburg, Germany
Univ Hamburg, Bioctr Klein Flottbek, D-22609 Hamburg, Germany
Univ Hamburg, Bot Garden, D-22609 Hamburg, Germany
Univ Hamburg, Ctr Bioinformat, D-20146 Hamburg, Germany


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Label: Bernardo-2007
Title: Prospects for genomewide selection for quantitative traits in maize
Journal: CROP SCI, 47 (3): 1082-1090 MAY-JUN 2007
Citations: 22
Authors: Bernardo, R;Yu, JM
Addresses:
Univ Minnesota, Dept Agron & Plant Genet, 411 Borlaug Hall,1991 Upper Buford Cir, St Paul, MN 55108 USA
Univ Minnesota, Dept Agron & Plant Genet, St Paul, MN 55108 USA
Kansas State Univ, Dept Agron, Manhattan, KS 66506 USA


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Label: Goddard-2007
Title: Genomic selection
Journal: J ANIM BREED GENET, 124 (6): 323-330 DEC 2007
Citations: 21
Authors: Goddard, ME;Hayes, BJ
Addresses:
Dept Primary Ind, 475 Mickleham Rd, Attwood, Vic 3049, Australia
Dept Primary Ind, Attwood, Vic 3049, Australia
Univ Melbourne, Attwood, Vic, Australia


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Label: VanRaden-2009
Title: Invited review: Reliability of genomic predictions for North American Holstein bulls
Journal: J DAIRY SCI, 92 (1): 16-24 JAN 2009
Citations: 19
Authors: VanRaden, PM;Van Tassell, CP;Wiggans, GR;Sonstegard, TS;Schnabel, RD;Taylor, JF;Schenkel, FS
Addresses:
USDA, ARS, Anim Improvement Programs Lab, Beltsville, MD 20705 USA
USDA, ARS, Anim Improvement Programs Lab, Beltsville, MD 20705 USA
USDA, Bovine Funct Genom Lab, Beltsville, MD 20705 USA
Univ Missouri, Div Anim Sci, Columbia, MO 65211 USA
Univ Guelph, Dept Anim & Poultry Sci, Ctr Genet Improvement Livestock, Guelph, ON N1G 2W1, Canada


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Label: Yandell-2007
Title: R/qtlbim: QTL with Bayesian interval mapping in experimental crosses
Journal: BIOINFORMATICS, 23 (5): 641-643 MAR 2007
Citations: 18
Authors: Yandell, BS;Mehta, T;Banerjee, S;Shriner, D;Venkataraman, R;Moon, JY;Neely, WW;Wu, H;von Smith, R;Yi, NJ
Addresses:
Univ Wisconsin, Dept Stat, 1300 Univ Ave, Madison, WI 53706 USA
Univ Wisconsin, Dept Stat, Madison, WI 53706 USA
Univ Wisconsin, Dept Hort, Madison, WI 53706 USA
Univ Alabama, Dept Biostat, Sect Stat Genet, Birmingham, AL 35294 USA
Johns Hopkins Bloomberg Sch Publ Hlth, Dept Biostat, Baltimore, MD 21205 USA
Jackson Lab, Bar Harbor, ME 04609 USA


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Label: Gibbs-2009
Title: Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds
Journal: SCIENCE, 324 (5926): 528-532 APR 24 2009
Citations: 17
Authors: Gibbs, RA;Taylor, JF;Van Tassell, CP;Barendse, W;Eversoie, KA;Gill, CA;Green, RD;Hamernik, DL;Kappes, SM;Lien, S;Matukumalli, LK;McEwan, JC;Nazareth, LV;Schnabel, RD;Taylor, JF;Weinstock, GM;Wheeler, DA;Ajmone-Marsan, P;Barendse, W;Boettcher, PJ;Caetano, AR;Garcia, JF;Hanotte, O;Mariani, P;Skow, LC;Williams, JL;Caetano, AR;Diallo, B;Green, RD;Hailemariam, L;Hanotte, O;Martinez, ML;Morris, CA;Silva, LOC;Spelman, RJ;Taylor, JF;Mulatu, W;Zhao, KY;Abbey, CA;Agaba, M;Araujo, FR;Bunch, RJ;Burton, J;Gill, CA;Gorni, C;Olivier, H;Harrison, BE;Luff, B;Machado, MA;Mariani, P;Morris, CA;Mwakaya, J;Plastow, G;Sim, W;Skow, LC;Smith, T;Sonstegard, TS;Spelman, RJ;Taylor, JF;Thomas, MB;Valentini, A;Williams, P;Womack, J;Wooliams, JA;Liu, Y;Qin, X;Worley, KC;Gao, C;Gill, CA;Jiang, HY;Liu, Y;Moore, SS;Nazareth, LV;Ren, YR;Song, XZ;Bustamante, CD;Hernandez, RD;Muzny, DM;Nazareth, LV;Patil, S;Lucas, AS;Fu, Q;Kent, MP;Moore, SS;Vega, R;Abbey, CA;Gao, C;Gill, CA;Green, RD;Matukumalli, LK;Matukumalli, A;McWilliam, S;Schnabel, RD;Sclep, G;Ajmone-Marsan, P;Bryc, K;Bustamante, CD;Choi, J;Gao, H;Grefenstette, JJ;Murdoch, B;Stella, A;Villa-Angulo, R;Wright, M;Aerts, J;Jann, O;Negrini, R;Sonstegard, TS;Williams, JL;Taylor, JF;Villa-Angulo, R;Goddard, ME;Hayes, BJ;Barendse, W;Bradley, DG;Boettcher, PJ;Bustamante, CD;da Silva, MB;Lau, LPL;Liu, GE;Lynn, DJ;Panzitta, F;Sclep, G;Wright, M;Dodds, KG
Addresses:
ARS, USDA, Bovine Funct Genom Lab, BARC E, Beltsville, MD 20705 USA
ARS, USDA, Bovine Funct Genom Lab, BARC E, Beltsville, MD 20705 USA
Baylor Coll Med, Human Genome Sequencing Ctr, Houston, TX 77030 USA
Baylor Coll Med, Dept Mol & Human Genet, Houston, TX 77030 USA
Univ Missouri, Div Anim Sci, Columbia, MO 65211 USA
CSIRO, Livestock Ind, St Lucia, Qld 4067, Australia
Univ New England, CRC, Beef Genet Technol, Armidale, NSW 2351, Australia
Alliance Anim Genome Res, Bethesda, MD 20816 USA
Texas A&M Univ, Dept Anim Sci, College Stn, TX 77843 USA
ARS, USDA, Natl Program Staff, Beltsville, MD 20705 USA
USDA Cooperat State Res Educ & Extens Serv, Washington, DC 20250 USA
Norwegian Univ Life Sci, Ctr Integrat Genet, N-1432 As, Norway
Norwegian Univ Life Sci, Dept Anim & Aquacultural Sci, N-1432 As, Norway
George Mason Univ, Dept Bioinformat & Computat Biol, Manassas, VA USA
AgRes, Anim Genom, Invermay 9053, Mosgiel, New Zealand
Univ Cattolica Sacro Cuore, Ist Zootecn, I-29100 Piacenza, Italy
IAEA, Joint United Nations FAO, Div Nucl Tech Food & Agr, A-1400 Vienna, Austria
Embrapa Genet Resources & Biotechnol Ctr, BR-70770900 Brasilia, DF, Brazil
UNESP, Dept Anim Prod & Hlth, IAEA, Collaborat Ctr Anim Genom & Bioinformat, BR-16050680 Aracatuba, SP, Brazil
Int Livestock Res Inst, Nairobi 00100, Kenya
Texas A&M Univ, Coll Vet Med & Biomed Sci, Dept Vet Integrat Biol Sci, College Stn, TX 77843 USA
Univ Edinburgh, Royal Dick Sch Vet Studies, Roslin Inst, Roslin E25 9PS, Midlothian, Scotland
Direct Natl Elevage, Conakry, Guinea
Ethiopian Inst Agr Res, Addis Ababa, Ethiopia
Embrapa Dairy Cattle Ctr, BR-36038330 Juiz De Fora, MG, Brazil
AgRes, Anim Genom, Hamilton 3240, New Zealand
Embrapa Beef Cattle Ctr, BR-79002970 Campo Grande, MS, Brazil
LIC, Res & Dev, Hamilton 3240, New Zealand
Int Livestock Res Inst, Addis Ababa, Ethiopia
Cornell Univ, Dept Biol Stat & Computat Biol, Ithaca, NY 14853 USA
Univ Edinburgh Summerhall, Royal Dick Sch Vet Studies, Edinburgh EH9 1QH, Midlothian, Scotland
Univ Alberta, AgFor Ctr 410, Edmonton, AB T6G 2P5, Canada
ARS, USDA, US Meat Anim Res Ctr, Mol Genet Res Unit, Clay Ctr, NE 68933 USA
Univ Tuscia, Dipartimento Prod Anim, I-01100 Viterbo, Italy
Texas A&M Univ, Coll Vet Med & Biomed Sci, Dept Vet Pathobiol, College Stn, TX 77843 USA
Wellcome Trust Sanger Inst, Hinxton CB10 1SA, England
Univ Melbourne, Fac Land & Food Resources, Parkville, Vic 3010, Australia
Trinity Coll Dublin, Smurfit Inst Genet, Dublin 2, Ireland
Simon Fraser Univ, Dept Mol Biol & Biochem, Burnaby, BC V5A 1S6, Canada


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Label: Muir-2007
Title: Comparison of genomic and traditional BLUP-estimated breeding value accuracy and selection response under alternative trait and genomic parameters
Journal: J ANIM BREED GENET, 124 (6): 342-355 DEC 2007
Citations: 16
Authors: Muir, WM
Addresses:
Purdue Univ, Dept Anim Sci, Rm G406 Lilly Hall, W Lafayette, IN 47907 USA
Purdue Univ, Dept Anim Sci, W Lafayette, IN 47907 USA


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Label: Eathington-2007
Title: Molecular markers in a commercial breeding program
Journal: CROP SCI, 47: S154-S163 Suppl. 3 DEC 2007
Citations: 15
Authors: Eathington, SR;Crosbie, TM;Edwards, MD;Reiter, R;Bull, JK
Addresses:
Monsanto Co, 3302 SE Convenience Blvd, Ankeny, IA 50021 USA
Monsanto Co, Ankeny, IA 50021 USA
Seminis Vegetable Seeds, Woodland, CA 95695 USA
Monsanto Co, Creve Coeur, MO 63167 USA


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Label: Xu-2007
Title: An empirical Bayes method for estimating epistatic effects of quantitative trait loci
Journal: BIOMETRICS, 63 (2): 513-521 JUN 2007
Citations: 15
Authors: Xu, SZ
Addresses:
Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA
Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA


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Label: Xu-2008
Title: Marker-assisted selection in plant breeding: From publications to practice
Journal: CROP SCI, 48 (2): 391-407 MAR-APR 2008
Citations: 15
Authors: Xu, YB;Crouch, JH
Addresses:
Int Maize & Wheat Improvement Ctr CIMMYT, Genet Resources & Enhancement Unit, Apdo,Postal 6-641, Mexico City 0660, DF, Mexico
Int Maize & Wheat Improvement Ctr CIMMYT, Genet Resources & Enhancement Unit, Mexico City 0660, DF, Mexico


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Label: Guo-2008
Title: Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS (TM)) Reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue
Journal: PLANT MOL BIOL, 66 (5): 551-563 MAR 2008
Citations: 14
Authors: Guo, M;Yang, S;Rupe, M;Hu, B;Bickel, DR;Arthur, L;Smith, O
Addresses:
Pioneer HiBred Int Inc, A DuPont Business, 7300 NW 62nd Ave, Johnston, IA 50131 USA
Pioneer HiBred Int Inc, A DuPont Business, Johnston, IA 50131 USA


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Label: Bernardo-2008
Title: Molecular markers and selection for complex traits in plants: Learning from the last 20 years
Journal: CROP SCI, 48 (5): 1649-1664 SEP-OCT 2008
Citations: 12
Authors: Bernardo, R
Addresses:
Univ Minnesota, Dep Agron & Plant Genet, 411 Borlaug Hall,1991 Upper Buford Cir, St Paul, MN 55108 USA
Univ Minnesota, Dep Agron & Plant Genet, St Paul, MN 55108 USA


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Label: Legarra-2008
Title: Technical note: Computing strategies in genome-wide selection
Journal: J DAIRY SCI, 91 (1): 360-366 JAN 2008
Citations: 11
Authors: Legarra, A;Misztal, I
Addresses:
INRA, UR631, Stn Ameliorat Genet Anim, BP 52627, F-32326 Castanet Tolosan, France
INRA, UR631, Stn Ameliorat Genet Anim, F-32326 Castanet Tolosan, France
Univ Georgia, Dept Anim & Dairy Sci, Athens, GA 30602 USA


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Label: VanRaden-2008
Title: Efficient Methods to Compute Genomic Predictions
Journal: J DAIRY SCI, 91 (11): 4414-4423 NOV 2008
Citations: 11
Authors: VanRaden, PM
Addresses:
USDA ARS, Anim Improvement Programs Lab, Beltsville, MD 20705 USA
USDA ARS, Anim Improvement Programs Lab, Beltsville, MD 20705 USA


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Label: Hayes-2009
Title: Invited review: Genomic selection in dairy cattle: Progress and challenges
Journal: J DAIRY SCI, 92 (2): 433-443 FEB 2009
Citations: 10
Authors: Hayes, BJ;Bowman, PJ;Chamberlain, AJ;Goddard, ME
Addresses:
Dept Primary Ind Victoria, Biosci Res Div, 1 Pk Dr, Bundoora, Vic 3083, Australia
Dept Primary Ind Victoria, Biosci Res Div, Bundoora, Vic 3083, Australia
Univ Melbourne, Fac Land & Food Resources, Parkville, Vic 3010, Australia


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Label: Park-2008
Title: The Bayesian Lasso
Journal: J AMER STATIST ASSN, 103 (482): 681-686 JUN 2008
Citations: 10
Authors: Park, T;Casella, G
Addresses:
Univ Florida, Dept Stat, Gainesville, FL 32611 USA
Univ Florida, Dept Stat, Gainesville, FL 32611 USA


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Label: Schrag-2009
Title: Molecular marker-based prediction of hybrid performance in maize using unbalanced data from multiple experiments with factorial crosses
Journal: THEOR APPL GENET, 118 (4): 741-751 FEB 2009
Citations: 8
Authors: Schrag, TA;Mohring, J;Maurer, HP;Dhillon, BS;Melchinger, AE;Piepho, HP;Sorensen, AP;Frisch, M
Addresses:
Univ Hohenheim, Inst Plant Breeding Seed Sci & Populat Genet, D-70593 Stuttgart, Germany
Univ Hohenheim, Inst Plant Breeding Seed Sci & Populat Genet, D-70593 Stuttgart, Germany
Univ Hohenheim, Inst Crop Prod & Grassland Res, Bioinformat Unit, D-70593 Stuttgart, Germany
Keygene, NL-6700 AE Wageningen, Netherlands
Univ Giessen, Inst Agron & Plant Breeding 2, D-35392 Giessen, Germany


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Label: Heffner-2009
Title: Genomic Selection for Crop Improvement
Journal: CROP SCI, 49 (1): 1-12 JAN-FEB 2009
Citations: 4
Authors: Heffner, EL;Sorrells, ME;Jannink, JL
Addresses:
Cornell Univ, USDA ARS, RW Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA
Cornell Univ, USDA ARS, RW Holley Ctr Agr & Hlth, Ithaca, NY 14853 USA
Cornell Univ, Dept Plant Breeding & Genet, Ithaca, NY 14853 USA


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KEYWORDS: GENOMIC SELECTION; GENOME-WIDE ALLELE-SPECIFIC EXPRESSION ANALYSIS USING MASSIVELY PARALLEL SIGNATURE SEQUENCING (MPSS (TM)) REVEALS CIS-; APPLYING GENOME-WIDE SELECTION; ALLELIC ADDITIVE GENE EXPRESSION; HETEROSIS ASSOCIATED GENE EXPRESSION.
[FRONT NUMBER: 9266 (2003-2009_6) (AGR/PLA: TT, APR 2010)]

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Top Topics : 2010 : Apr. 2010 - APPLYING GENOME-WIDE SELECTION - Research Front Map