Science Watch® - Tracking Trends and Performance in Basic Research
March/April 2000


Linking Tumor-Suppressor Loss and Oncogene Activation by Jeremy Cherfas




WHAT'S HOT IN BIOLOGY...

Rank Paper Citations
This
Period
Nov-
Dec
99
Rank
Last Period
Sep-
Oct
99
1 P. Li, et al., "Cytochrome c and dATP-dependent formation of Apaf-1/Caspase-9 complex initiates an apoptotic protease cascade, " Cell, 91(4):479-89, 14 November 1997. [Howard Hughes Med. Inst., U. Texas Southwest. Med. Ctr., Dallas; Thomas Jefferson U., Philadelphia, PA] YG492 57 5
2 S.T. Cole, et al., "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence," Nature, 393(6685):537, 11 June 1998. [Sanger Ctr., Hinxton, England; Inst. Pasteur, Paris, France; NIAID, NIH, Hamilton, MT; Tech. U. Denmark, Lyngby] *ZT988 57 10
3 D.A. Doyle, et al., "Structure of the potassium channel: Molecular basis of K+ conduction and selectivity," Science, 280(5360):69-77, 3 April 1998. [Rockefeller U., New York, NY; Howard Hughes Med. Inst., Rockefeller U., NY] *ZF314 50 7
4 F. Kunst, et al., "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis," Nature, 390(6657):249-56, 20 November 1997. [46 institutions worldwide] *YG667 40 3
5 M. Enari, et al., "A caspase-activated DNase that degrades DNA during apoptosis, and its inhibitor ICAD," Nature, 391(6662):43-50, 1 January 1998. [Osaka U. Med. Sch., Japan; Kirin Brewery Co., Kanagawa, Japan; Osaka Biosci. Inst., Japan] *YP888 39 4
6 S.R. Datta, et al., "Akt phosphorylation of BAD couples survival signals to the cell-intrinsic death machinery," Cell, 91(2):231-41, 17 October 1997. [Harvard Med. Sch., Boston, MA: Emory U., Atlanta, GA] *YC350 37 9
7 H.-P. Klenk, et al., "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus," Nature, 390(6658):364, 27 November 1997. [Inst. Genomic Res., Rockville, MD; Argonne Natl. Lab., IL; U. Illinois, Champaign-Urbana] *YH549 35 6
8 J.K. Wong, et al., "Recovery of replication-competent HIV despite prolonged suppression of plasma viremia," Science, 278(5341):1291-5, 14 November 1997. [U. Calif., San Diego; Vet. Affairs San Diego Healthcare Syst., CA] *YG043 34
9 T.-C. He, et al., "Identification of c-MYC as a target of the APC pathway," Science, 281(5382):1509-12, 4 September 1998. [Johns Hopkins U., Baltimore, MD; Howard Hughes Med. Inst., Johns Hopkins U., Baltimore] *116RJ 33
10 D.R. Smith, et al., "Complete genome sequence of Methanobacterium thermoautotrophicum DELTAH: Functional analysis and comparative genomics," J. Bacteriology, 179(22):7135-55, November 1997. [Genome Therapeutics Corp., Waltham, MA; Howard Hughes Med. Inst., Harvard Med. Sch., Boston, MA; F. Hutchinson Cancer Res. Ctr., Seattle, WA; Ohio State U., Columbus] *YG075 32 8

SOURCE: ISI's Hot Papers DatabaseRead the full legend.

A

couple of citation superstars are at it again, with a paper that built a bridge between two well studied, but hitherto unlinked, genes and demonstrated the first connection between the loss of a tumor suppressor gene and the activation of an oncogene. 

Bert Vogelstein
Kenneth W. Kinzler

In paper #9, Bert Vogelstein and Kenneth Kinzler of the Johns Hopkins Oncology Center, Baltimore, Maryland, and their colleagues show that the most common gene for colon cancer works by suppressing c-MYC, which had been linked to a variety of cancers more than 20 years ago, but with no clue as to how it caused cancer.

   More than 85 percent of colorectal cancers have a mutation that truncates the adenomatous polyposis coli (APC) gene. When it is functioning normally APC protein suppresses tumorous growth. It binds to and promotes the degradation of b-catenin, which in turn binds to members of the T-cell factor 4 (Tcf-4) family of transcription factors. Tcf-4 activates certain genes. So a mutated APC gene allows more b-catenin to bind to Tcf-4, stimulating cancerous growth, perhaps as a result of Tcf-4 activating an oncogene–but which gene?

   Kinzler and his team developed a technique called serial analysis of gene expression (SAGE), which they use to track active genes. SAGE depends on creating short DNA copies, or tags, of active mRNA in the target cells. Using cells with and without a functional APC gene resulted in a huge collection of tags, most of which were present at the same level in both sets of cells. But a few differed, either over-expressed or repressed in cells with the APC gene. Because they knew APC suppresses b-catenin the team focused on the repressed tags; to their surprise one of the most highly down-regulated tags corresponded to c-MYC, one of the first oncogenes to be identified.

   To confirm the possibility that APC directly controls c-MYC via b-catenin, the team stitched a c-MYC promoter sequence to a luciferase reporter gene. Any cell containing this construct–and luciferin–would glow gently when the c-MYC gene was active. Inserted into colorectal cancer cells, on went the light, only to be turned off by the addition of APC protein. And b-catenin also activated the reporter construct.

   "This ends one chapter of the APC story," as Vogelstein said at the time of the paper's publication, but begins many more. "Master genes such as...APC usually don't work on just one pathway. So c-MYC is probably not the only gene whose expression is controlled by APC. We are working to find the others."

   The model that emerges is that in normal colon cells APC prevents b-catenin from binding to Tcf-4 and activating c-MYC. The vast majority of colorectal tumors have an inactive APC gene, though a few–about 10 percent–have normal APC but a mutated b-catenin gene; either way, c-MYC is switched on, which transforms the cell and leads to tumorous growth. What is particularly neat about this work is that it makes sense of a puzzling observation: Although c-MYC has long been known to be active in colorectal tumors, mutations of c-MYC are very rare in colon cancer. In other cancers, c-MYC itself is mutated. If APC controls c-MYC, that solves the problem.

   It also suggests therapeutic possibilities: the discovery that c-MYC is a final link in the chain that causes colorectal cancer, the number two cause of cancer deaths in the United States, "brings up an obvious and potentially powerful way to disrupt that interaction," according to Vogelstein, whose lab has been actively searching for ways of blocking the activation of c-MYC.

   Of more academic interest, this paper weaves together several different investigative threads. b-catenin was first isolated as a target of E-cadherin, a protein that projects through the cell membrane and helps cells stick together. Embryologists discovered that b-catenin is also part of the Wnt pathway, which is crucial in controlling cell growth during embryo development. Then came evidence that b-catenin is involved in tumor cells. The final link, to c-MYC, is by no means the end. As Kinzler has observed, "People will be defining this pathway for many years."end

Science writer Dr. Jeremy Cherfas
works with the Biotechnology and Biological Sciences
Research Council of the U.K., Swindon.


Science Watch®, March/April 2000, Vol. 11, No. 2
Citing URL: http://www.sciencewatch.com/march-april2000/sw_march-april2000_page8.htm

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