Science Watch® - Tracking Trends and Performance in Basic Research
March/April 2007


DNA Damage Response: Catching a Break Before Cells Go Bad

by Jeremy Cherfas

WHAT'S HOT IN BIOLOGY
Rank      Paper Citations This Period (Sep-Oct 06) Rank Last Period (Jul-Aug 06)
1 D. Altshuler, et al. (Int.’l HapMap Consortium), "A haplotype map of the human genome," Nature, 437(7063): 1299-1320, 27 October 2005. [63 institutions worldwide] *977UQ 94 1
2 L.P. Lim, et al., "Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs," Nature, 433(7027): 769-73, 17 February 2005. [Rosetta Inpharmatics, Seattle, WA; Whitehead Inst., MIT, Cambridge, MA] *897XH 33
3 P.L. Ross, et al., "Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents," Mol. Cell. Proteomics, 3(12): 1154-69, December 2004. [Applied Biosystems, Framingham, MA; Cancer Res. UK, London; U. Massachusetts, Worcester; Imperial Coll., London, U.K.] *884QK 33
4 V.G. Gorgoulis, et al., "Activation of the DNA damage checkpoint and genomic instability in human precancerous lesions," Nature, 434(7035): 907-13, 14 April 2005. [7 U.S. and European institutions] *915SV 33
5 J. Bartkova, et al., "DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis," Nature, 434(7035): 864-70, 14 April 2005. [5 European institutions] *915SV 32
6 D.A. Hinds, et al., "Whole-genome patterns of common DNA variation in three human populations," Science, 307(5712): 1072-9, 18 February 2005. [Perlegen Sciences Inc., Mountain View, CA; Int’l. Computer Science Inst., Berkeley, CA; U. Calif., San Diego] *900ED 31
7 D.D. Sarbassov, et al., "Phosphorylation and regulation of Akt/PKB by the Rictor-mTOR complex," Science, 307(5712): 1098-1101, 18 February 2005. [MIT, Cambridge, MA; Broad Inst., Cambridge, MA] *900ED 31
8 L.W. Hillier, et al. (Int.’l Chicken Genome Seq. Consortium), "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution," Nature, 432(7018): 695-716, 9 December 2004. [50 institutions worldwide] *877UE 30 5
9 A. Zimprich, et al., "Mutations in LRRK2 cause autosomal-dominant Parkinsonism with pleomorphic pathology," Neuron, 44(4): 601-7, 18 November 2004. [10 U.S. and European institutions] *874GE 30
10 R.L. Levine, et al., "Activating mutation in the tyrosine kinase JAK2 in polycythemia vera, essential thrombocythemia, and myeloid metaplasia with myelofibrosis," Cancer Cell, 7(4): 387-97, April 2005. [7 U.S. and European institutions] *921CL 29 3
SOURCE: Thomson Scientific's Hot Papers Database.
Read the Legend.

T

he gene called p53 is the most frequently mutated gene in human cancers. It starts a process that usually results in programmed cell death, or apoptosis, which keeps potential cancers in check. The big question has been, what triggers this tumor-supression gene? What is it about rapidly dividing precancerous cells—but not normal cells—that brings p53 into play? A likely answer is provided by the two papers at #4 and #5. It seems to be something other than p53 alone, namely the DNA damage response.

Two groups, led by Jiri Bartek of the Institute of Cancer Biology in Copenhagen, Denmark, and by Thanos Halazonetis, now at the University of Geneva in Switzerland, obtained almost identical results implicating the DNA damage response. Bartek's group used immunochemistry to examine different stages from a variety of human tumors. High levels of proteins from four different genes—Chek2, ataxia telangiectasia mutated (ATM), phosphorylated histron (H2AX) and p53—characterized cells from early bladder, breast, colon, and lung cancers. Halazonetis' group found very similar results in lung cancer cells, with elevated levels of Chek2 and H2AX and localized spots of a p53-binding protein (PBP1). All of these genes are part of the DNA damage response.

Cells routinely check the DNA they have copied prior to division. One kind of damage they monitor is a double-stranded break in the DNA. There are two monitoring mechanisms at work. One prompts repair machinery to make good the damage. The other is a checkpoint rather than a proofreader. Some double-stranded breaks presumably cannot be repaired. The cell deals with these by committing suicide, and the effectiveness of this system is manifested in the amazing rarity of cancers, given the billions of cell divisions, with the attendant possibility of damage, that take place over the course of a lifetime. Chek2, ATM, H2AX and PBP1 are components of the DNA damage response, and they precede the activation of p53. These changes are not seen in rapidly dividing normal cells.

Both groups went beyond observation to experimentally induce the changes seen in precancerous cells. Bartek and his colleagues triggered over-expression of an oncogene in a cell culture. Halazonetis' team grafted human skin onto the backs of immune-deficient mice and then induced cancerous changes by injecting the mice with an excess of growth factors. In both cases, the cells showed a clear DNA damage response.

So, what is going on? Both groups propose that cancer will develop only if components of the DNA damage response are inactivated. This would include the ubiquitous p53, but not be limited to it. A consequence of this would be an increase in genetic instability, which in turn would increase the mutation rate and probably speed the development of the cancer. That too is borne out by observation. Both groups note that the double-stranded DNA breaks that they see in precancerous cells are preferentially associated with fragile sites, sequences that the normal cell machinery finds difficult to copy. But that still does not explain how the cell distinguishes the rapid division of precancerous cells from the equally rapid division of normal cells.

Halazonetis refers to "DNA replication stress." Bartek talks of "oncogenic stress." Both are referring to changes that would be associated with "abnormal" division and that would trigger the DNA damage response. But what is the nature of that stress? In a commentary on the two papers, Ashok Venkitaraman, of Cancer Research UK at Cambridge, speculates that a more complex understanding of cell replication than the simple on-off mechanism that dominates current thought might provide some answers (Nature, 434[7035]: 829-30, 14 April 2005). Perhaps, he speculates, cancer-cell cycles could alter the ratios of normal intermediates, such as single-stranded DNA or oxidative changes to the DNA. Or they might result in abnormal structures such as double-stranded breaks. Perhaps precancerous division could even somehow lower the threshold for eliciting the DNA damage response. The search for an understanding of replication stress presumably underlies some of the citation impact of the two papers.

The upshot is that for proliferating cells to survive into full-blown tumors they must evade the checkpoints and suicides. Inherited mutations that affect the components of the "assess and abort" checkpoint system will thus make cancers more likely in those who carry them. And even in the absence of such mutations, those cancers that survive will have done so by selecting for a compromised p53. That accounts for the prevalence of mutated p53 in cancers, while the DNA damage response itself accounts for the rarity of all cancers.end

Dr. Jeremy Cherfas is Science Writer at Bioversity International, Rome, Italy. 

View the top 10 scientists and/or top 3 Hot Papers in Biology & Biochemistry.
Science Watch®, March/April 2007, Vol. 18, No. 2
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