Science Watch® - Tracking Trends and Performance In Basic Research
September/October 1998


A Novel Way to Make Volumes of Molecular Libraries by John Emsley


WHAT'S HOT IN CHEMISTRY...

Rank Paper Citations
This Period
May-June
98
Rank
Last Period
Mar-Apr
98
1 A.P. Scott, L. Radom, "Harmonic vibrational frequencies: an evaluation of Hartree-Fock, Moller-Plesset, quadratic configuration interaction, density functional theory, and semiempirical scale factors," J. Phys. Chem., 100(41):16502-13, 10 October 1996. [Australian. Natl. U., Canberra] *VL579 21 1 21 1
2 A. Thess, et al., "Crystalline ropes of metallic carbon nanotubes," Science, 273(5274):483-7, 26 July 1996. [Rice U., Houston, TX; U. Pennsylvania, Philadelphia; Inst. Charles Sadron, Strasbourg, France; Michigan St. U., E. Lansing] *UY983 20 2 20 2
3 S.J. Tans, et al., "Individual single-wall carbon nanotubes as quantum wires," Nature, 386(6624):474-7, 3 April 1997. [Delft U. Technol., Netherlands; Rice U., Houston, TX] *WR256 15 3 15 3
4 R.P. Andres, et al., "Self-assembly of a two-dimensional superlattice of molecularly linked metal clusters," Science, 273(5282):1690-3, 20 September 1996. [Purdue U., W. Lafayette, IN] *VH408 14 + 14
5 P. von Rague Schleyer, et al., "Nucleus-independent chemical shifts: a simple and efficient aromaticity probe," J. Amer. Chem. Soc., 118(26):6317-8, 3 July 1996. [U. Erlangen, Germany] *UV292 13 + 13
6 S.W. Kaldor, et al., "Use of solid supported nucleophiles and electrophiles for the purification of non-peptide small molecule libraries," Tetrahedron Lett., 37(40):30 September 1996. [Lilly Res. Labs., Indianapolis, IN] *VK223
12 +
12
7 D.L. Flynn, et al., "Chemical library purification strategies based on principles of complementary molecular reactivity and molecular recognition," J. Amer. Chem. Soc., 119(21):4874-81, 28 May 1997. [Searle Discovery Res., St. Louis, MO; Ceregen, St. Louis, MO] *XB674 12 + 12
8 R.J. Booth, J.C. Hodges, "Polymer-supported quenching reagents for parallel purification," J. Amer. Chem. Soc., 119(21):4882-6, 28 May 1997. [Parke-Davis Pharmaceutical Res., Ann Arbor, MI] *XB674 12 + 12
9 J.P. Wolfe, S. Wagaw, S.L. Buchwald, "An improved catalyst system for aromatic carbon-nitrogen bond formation: the possible involvement of bis(phosphine) palladium complexes as key intermediates," J. Amer. Chem. Soc., 118(30):7215-6, 31 July 1996. [MIT, Cambridge, MA] *VA026 9 + 9
10 A.D. Horton, et al., "Cationic alkylzirconium complexes based on a tridentate diamide ligand: New alkene polymerization catalysts," Organometallics, 15(12):2672-4, 11 June 1996. [Shell Res. Tech. Ctr., Amsterdam, Netherlands] *UQ719 10 + 9 5
SOURCE: ISI's Hot Papers Database.  Read the full legend.
Only papers published since May 1996 are tracked. A
dagger indicates that the paper was not ranked in the Top Ten during the last period. In the event that two or more papers collected the same number of citations in the most recent bimonthly period, total citations to date determine the rankings.

   Combinatorial chemistry is sweeping all before it, especially among pharmaceutical companies. The method produces large numbers of similar compounds, in what are called "libraries" that can then be screened for activity, which may be in triggering a biologically important receptor, or blocking the active site of a key enzyme. The method was introduced into biochemistry by H. Mario Geysen and Richard A. Houghten as a way of ringing the changes in polypeptides, so that all possible combinations of a sequence of amino acids could be conveniently produced. Now chemists are using the method in a big way to make their molecules, and are even finding ways of improving it.

   Papers #6, #7, and #8 report the advantages of using "quenching reagents" attached to polymer beads as a quick and easy way of purifying a library of surplus reagents and impurities.

   In the original method, a library was built up on polymer beads, to which the substrate molecule was attached, via a link, and then the various components added to give all possible combinations. Generally these had then to be released from their polymer tethers, before being tested against the target. While combinatorial chemistry enables hundreds and thousands of molecules to be made together, in practice it was often difficult to achieve. Choosing the right polymer support, finding the right link, and attaching the substrate were only the start. At each stage it was necessary to add excess reagents to drive reactions to completion, then to remove the excess--and any unwanted by-products--before adding the next reagent…and so on, until the desired library had been constructed. Anything which could simplify this procedure would clearly be of great benefit.

   Papers #6, #7, and #8 are all concerned with the same breakthrough: using a polymer-bound material selectively to remove unwanted materials from reaction products. In this way the library is built by starting with the substrate in solution, and the many variants are made using traditional methods. Then excess polymer-bound quenching reagent is added to mop up the unwanted reactants, after which it can simply be filtered off, leaving the combinatorial mixture free to move on to the next stage.

   Paper #6 announced the new technique, and came from the group headed by Stephen Kaldor and Miles Siegel, based at the labs of the international drug company Eli Lilly in Indianapolis, Indiana. They showed that the method worked with amine alkylations, in which solid supported isocyanates could scavenge excess amine reagents, or vice versa. After they had done their work, the beads were easily filtered off, leaving a solution that could be monitored by ordinary chemical analysis methods, something that it is not possible to do when the product is attached to a polymer bead.

   Papers #7 and #8 were submitted on the same day for publication, and appeared back-to-back in the same issue of Journal of the American Chemical Society. The paper from Daniel Flynn’s group at the labs of the drug company Searle in St. Louis, Missouri, and Skokie, Illinois, also concentrated on the reactions of amines with other reagents, as did that of John Hodges and John Booth, of Parke-Davis Pharmaceutical Research, Ann Arbor, Michigan. Readers who wish to get a grasp of the importance and use of polymer-supported quenching reagents should read the Hodges and Booth paper, which is a model of clarity.

   The three papers promise a return to purification methods which give solution-phase combinatorial synthesis other advantages over the solid-phase alternative. In addition to easy monitoring and spectroscopic analysis, it again permits the use of "protecting groups" to shield the sensitive parts of a molecule from attack. Not only that, but relative to traditional chromatography, polymer-support quenching offers a method of purification that uses less solvent, less solid support, and does not need the collection of multiple fractions. This, argue Hodges and Booth, more than compensates for the increased cost of their resins, which in any case can be made in large quantities from cheap materials. And while the final products may not be quite so pure, they are pure enough to go forward for screening as potential drugs.

Dr. John Emsley is Science Writer in Residence at the Department of Chemistry, University of Cambridge, U.K.

  
Science Watch®, September/October 1998, Vol. 9, No. 5
Citing URL: http://www.sciencewatch.com/sept-oct/science-watch_sept-oct98_page7.htm

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